Pumpkin Cheesecake Ginger Cookies combine the warm spices of ginger and cinnamon with the rich, creamy goodness of a pumpkin cheesecake filling. From the molasses to the pumpkin and cream cheese, each ingredient creates a perfectly spiced, fall-inspired treat!

These cookies start with a simple spiced dough that’s baked in muffin tins to create the perfect little bowl for holding a creamy, pumpkin-spiced cheesecake filling. Not only do they look impressive, but they’re also surprisingly easy to make—giving you a bakery-worthy treat with minimal effort!
Why you’ll love this Easy Pumpkin Cookie Recipe
- Perfect fall flavor: The blend of ginger, cinnamon, and pumpkin captures all the cozy, spiced flavors of the season.
- Beautiful and unique: Baked in muffin tins, these cookies have a fun “cookie cup” shape that makes them look extra special.
- Easy yet impressive: Simple ingredients and an easy process come together to create a dessert that tastes and looks bakery-quality.

Pumpkin Cheesecake Ginger Cookie Ingredients
Oil: Create soft, moist cookies by adding 1 ⅓ cups of oil to the dough.
Sugar: Use 2 cups of granulated sugar to get a cookie that’s sweet and chewy.
Eggs: 2 eggs bind ingredients and adds richness.
Baking soda: Adding 4 tsp of baking soda help the cookies puff up as they bake.
Molasses: Use 8 TBSP of molasses, this is ½ cup, to add flavor and depth to the dough.
Flour: The base of this cookie dough is 4 cups of all-purpose flour.
Spices: 1 tsp of ginger and 2 tsp of cinnamon give the cookies warm, cozy flavor.

Pumpkin Cheesecake Filling
Cream cheese: You will need one 8-ounce package of softened cream cheese.
Butter: Give the filling a rich taste by adding 4 TBSP of softened butter.
Powdered sugar: 3 cups of powdered sugar sweetens and thickness it for piping into the cookies.
Spices: For a warm, earthy flavor add 1 tsp of cinnamon and 1 ¼ tsp of nutmeg.
Pumpkin: ⅓ cup of pumpkin puree provides the natural orange color and wonderful pumpkin flavor.
Extract: You will need ½ tsp of vanilla extract to enhance the flavors in the filling.

Tips for making Pumpkin Spice Cookie Cups
Full instructions are in the recipe card below, but here are a few tips for making these delicious treats!
- Chill the dough: Chilling helps the cookies hold their shape and prevents them from spreading too much while baking.
- Press gently after baking: Creating a deeper center while the cookies are still warm ensures plenty of space for the creamy filling.
- Use softened ingredients: Make sure the butter and cream cheese are fully softened for a smooth, lump-free pumpkin cheesecake filling.

How long are cheesecake cookie cups good for?
These cookies will stay fresh for about 3–4 days when stored in an airtight container in the refrigerator. Because of the cream cheese filling, they should be kept chilled—just let them sit at room temperature for 10–15 minutes before serving for the best texture and flavor.
Can I freeze pumpkin cheesecake cookies?
Yes, these cookies can be made and then placed in the freezer for up to 2 months. I recommend laying them in an airtight container so that they are tops up and not stacked. This helps to prevent the filling from getting bumped around. To thaw the cookies simply place them in the fridge overnight to thaw.
Can I make the cookie cups ahead of time?
Yes! You can bake the cookie cups a day or two in advance. Store them in an airtight container at room temperature, then fill them with the cheesecake mixture when you’re ready to serve.
Can I use canned pumpkin pie filling instead of pumpkin purée?
It’s best to use plain pumpkin purée. Pumpkin pie filling already contains sugar and spices, which would make the cheesecake mixture too sweet and change the flavor balance.

How do I know when the cookie cups are done baking?
The edges should look set and slightly golden but not browned. They’ll continue to firm up as they cool, so remove them from the oven before they get too dark.
More delicious pumpkin cookie recipes to enjoy here:
- Make a batch of Pumpkin Pudding Cookies to enjoy today! The pudding mix keeps them moist while the white chocolate chips add a sweet, melty touch.
- Pumpkin Snickerdoodles are a cozy and classic fall treat everyone will love!
- Our Iced Pumpkin Cookies are soft, cake-like treats full of warm cinnamon, nutmeg, and vanilla flavor. Topped with a silky vanilla glaze, they’re the perfect cozy cookie for pumpkin lovers.
- These Apple Pumpkin Oatmeal Cookies capture all the best flavors of fall in every bite!
- Pumpkin Chocolate Chip Cookies are bursting with warm pumpkin flavor. The addition of pumpkin makes these classic chocolate chip cookies extra moist and irresistibly tender.
- Soft Pumpkin Gingersnap Cookies are warmly spiced and full of incredible ginger flavor. Their soft, chewy texture makes them an easy and irresistible fall treat!

These pumpkin cheesecake-filled cookies are a recipe you’ll want to repeat often this season. Made with spiced cookies and a spiced pumpkin filling, every bite is a wonderful comfort and bite of Fall.
wilhelmina says
I love these little cookie cups! So fabulous!
Jenn says
Loving these creative cheesecake cookies! Thanks so much for the recipe!
Betty says
Ur recipe doesn’t say if ur using the regular size muffin pan or mini muffin pan plz help
Betty says
What size muffin pan
Kaylie says
A mini muffin pan